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Generated 05-Nov-2014 07:52:27 using cpu time.

Function NameCallsTotal TimeSelf Time*Total Time Plot
(dark band = self time)
demo3D11157718.877 s0.901 s
img2slml157700.311 s0.220 s
img2model157691.369 s0.401 s
percellparam20257685.230 s0.230 s
seg_cell_and_nucleus20241357.345 s10.895 s
preprocess40440584.927 s7.290 s
region_seg40440131.760 s4440.112 s
region_seg>sussman23450034274.138 s22552.114 s
cellfit_percell20216262.414 s0.371 s
find_cell_codes20216255.334 s11.997 s
ml_parsecell302915799.724 s1.953 s
ml_parsecell>updates23331715790.241 s316.838 s
ml_getlinept2218074613822.469 s253.791 s
ml_getlinept434943413568.678 s13534.911 s
region_seg>shiftD2345003458.474 s2321.351 s
region_seg>shiftU2345003441.681 s2302.545 s
region_seg>sussman_sign2345002540.865 s2540.865 s
region_seg>shiftR4690002285.952 s2285.952 s
region_seg>shiftL4690002271.312 s2271.312 s
region_seg>get_curvature2345001379.138 s626.617 s
ml_imgptspixel3270960973.446 s469.069 s
sub2ind5160919951.776 s951.776 s
ml_tracecontour6057540.798 s151.490 s
unique5570425.869 s425.869 s
ml_downsize606392.994 s0.751 s
interp3417379.545 s71.749 s
ml_tracecontour>ml_getnbidx1216653348.262 s44.111 s
ml_readimage808336.445 s0.330 s
tif2img619331.749 s203.021 s
ml_shift1216653304.151 s51.321 s
circshift1216653252.830 s179.428 s
ind2sub308853252.319 s252.319 s
ml_rescaleImage2Cell202223.039 s0.421 s
tp_stretch3d404222.618 s10.184 s
imresize82820204.763 s22.731 s
imfill12118140.474 s4.536 s
images/private/morphop14245137.550 s11.155 s
imclose6060135.718 s0.501 s
imread11550128.628 s5.187 s
repmat100930122.019 s122.019 s
imreconstruct13839110.753 s0.771 s
ml_mainobjcontour6058108.300 s5.277 s
images/private/imreconstructmex (MEX-file)13839106.738 s106.738 s
imagesci/private/readtif11550106.708 s2.654 s
meshgrid607103.023 s103.023 s
xyzvchk417101.150 s0.190 s
interp3>linear417101.120 s101.120 s
imagesci/private/rtifc (MEX-file)1155099.738 s99.738 s
imresize>parseInputs8282098.296 s18.726 s
bwmorph5337189.183 s12.808 s
circshift>ParseInputs121665373.402 s73.402 s
imerode778169.857 s0.601 s
imdilate646468.865 s0.401 s
tp_nucimgfeat20265.150 s5.618 s
images/private/morphmex (MEX-file)7565350.440 s50.440 s
applylut5337148.918 s2.834 s
ml_rotate172144.992 s0.050 s
imrotate172144.942 s0.561 s
imresize>contributions16564043.140 s34.778 s
padarray5399942.939 s3.965 s
ml_addrow122291241.377 s41.377 s
bwmorph>dilate3519840.887 s1.272 s
images/private/applylutc (MEX-file)5337139.795 s39.795 s
region_seg>mask2phi40435.860 s2.123 s
flipud107877533.767 s33.767 s
bwdist80833.697 s3.295 s
tformarray172130.352 s0.401 s
images/private/bwdistComputeEDT (MEX-file)80829.381 s29.381 s
strmatch8614529.381 s29.381 s
bwperim1817329.301 s4.516 s
images/private/morphop>ParseInputs1424524.304 s6.088 s
bwfill1511223.052 s5.377 s
padarray>ConstantPad5399921.650 s12.077 s
strel>strel.getneighbors7393220.338 s11.586 s
imresize>resizeAlongDim16564019.677 s9.703 s
imresize>fixupSizeAndScale8282019.587 s8.071 s
imresize>findMethodArg8282018.395 s9.844 s
padarray>ParseInputs5399917.324 s12.087 s
urlwrite417.044 s0.020 s
imresize>parsePreMethodArgs8282017.034 s11.957 s
...lwidgets.io.InterruptibleStreamCopier (Java method)417.004 s17.004 s
tformarray>resample172115.682 s0.120 s
images/private/resampsep (MEX-file)172115.562 s15.562 s
imagesci/private/imftype1297715.541 s2.463 s
ml_bwmajorangle605813.258 s2.513 s
imfill>parse_inputs1211812.027 s2.103 s
ml_rcthreshold40411.916 s10.214 s
imresize>parseMethodArg8282011.646 s7.410 s
ml_findmainobj2d_bw908910.675 s6.179 s
ml_findmainobj40410.414 s0.841 s
cell.strmatch3277410.394 s2.604 s
tp_surfmap20210.344 s0.360 s
strel>MakeDiskStrel2029.703 s0.230 s
strel>strel.getnhood2318079.603 s9.603 s
images/private/mkconstarray539999.573 s2.313 s
images/private/tform34429.103 s0.741 s
ml_findobjs4049.093 s2.223 s
bwlabel185898.982 s3.545 s
conndef121188.832 s2.584 s
...intermediate_results_from_temp_folder18.722 s8.582 s
imresize>isMethodString828208.552 s4.456 s
imformats129778.532 s2.233 s
bwmorph>perim4121158.372 s0.451 s
imresize>triangle1656408.362 s8.362 s
imresize>getMethodInfo1656408.332 s8.332 s
tforminv17218.221 s0.040 s
bwboundaries17218.201 s0.190 s
squeeze846777.911 s7.911 s
maketform86057.540 s1.092 s
ml_findmainobj_bw60587.270 s3.895 s
...size>isPureNearestNeighborComputation3312807.090 s7.090 s
bwboundaries>FindHoleBoundaries17216.890 s0.150 s
extract_radius_ratio2016.649 s6.499 s
images/.../morphop>NhoodShapesOrthogonal121206.639 s3.425 s
interp21896.499 s0.891 s
maketform>inv_composite17216.399 s0.180 s
skewness60586.359 s4.406 s
imresize>postprocessImage828206.339 s4.576 s
imformats>find_in_registry129776.299 s6.299 s
applylut>ParseInputs533716.289 s4.937 s
ml_objs2img121156.179 s3.174 s
ndgrid6066.108 s6.108 s
imclearborder17216.068 s0.451 s
iptcheckstrs800555.938 s5.458 s
iptcheckinput (MEX-file)6650315.518 s5.518 s
imresize>fixupSize828205.287 s5.287 s
imresize>preprocessImage828204.927 s3.535 s
num2str140104.897 s2.193 s
images/private/morphop>PadSize125244.707 s4.707 s
imresize>findFirstParamString828204.707 s4.707 s
imresize>scaleOrSize828204.646 s4.046 s
...ze>resizeAlongDimUsingNearestNeighbor828204.626 s4.626 s
imresize>isInputIndexed2484604.576 s4.576 s
bwlabeln4044.556 s0.030 s
images/private/labelBinaryRuns185894.556 s2.974 s
imagesci/private/istif129774.546 s4.546 s
tz_maskimg_3d8084.486 s4.466 s
strel>strel.strel62704.446 s1.372 s
images/private/bwlabelnmex (MEX-file)4044.416 s4.416 s
ml_bwmoment60584.386 s2.463 s
imfinfo14274.296 s0.451 s
iptchecknargin3037484.236 s4.236 s
ml_obj2img2D60574.186 s0.971 s
imresize>deriveScaleFromSize828204.126 s4.126 s
setfield575403.986 s3.986 s
maketform>trans_affine34423.875 s3.875 s
maketform>inv_affine17213.845 s0.050 s
ml_obj2img60583.815 s0.851 s
strel>MakeLineStrel4043.805 s0.461 s
images/private/bwfillc (MEX-file)75563.775 s3.775 s
getfield583583.645 s3.645 s
imcomplement380753.555 s1.642 s
strel>strel.getheight756533.485 s3.485 s
imresize>checkForMissingOutputArgument828203.365 s1.943 s
imresize>warnIfPostMethodArgs828203.325 s3.325 s
imreconstruct>ParseInputs138393.244 s1.632 s
imagesci/private/readtif>parse_args115503.234 s2.754 s
cov121153.164 s2.934 s
train_cell_shape_model313.054 s0.381 s
maketform>getTransformType86053.054 s0.371 s
imresize>parseParamValuePairs828202.874 s2.874 s
images/...te/morphop>ProcessOptionalArgs142452.854 s1.833 s
makeresampler17212.824 s0.190 s
iptcheckconn341372.804 s2.594 s
strel>MakePeriodicLineStrel8082.794 s0.170 s
iscellstr655702.634 s2.634 s
images/private/imresizemex (MEX-file)828202.614 s2.614 s
imread>parse_inputs115502.574 s2.574 s
tp_spcylfeat2022.513 s0.050 s
extract_radius_ratio_old12.513 s2.333 s
spap22022.423 s0.100 s
bwmorph>perim860582.373 s0.350 s
bwfill>ParseInputs151122.323 s2.323 s
tformarray>ConstructGrid17212.323 s0.100 s
imagesci/private/imtifinfo14272.313 s0.300 s
xyzchk1892.303 s0.050 s
spap2>spap214042.253 s0.100 s
tformarray>CombinedGrid17212.223 s1.092 s
imresize>fixupScale828202.103 s2.103 s
imclose>ParseInputs60601.953 s0.851 s
images/private/strelcheck203051.943 s0.931 s
imagesci/private/tifftagsread (MEX-file)14271.933 s1.933 s
makeresampler>MakeSeparable17211.933 s0.180 s
imresize>dimensionOrder828201.933 s1.933 s
images/private/imcomplementmex (MEX-file)380751.913 s1.913 s
int2str116861.893 s1.893 s
imhist4041.702 s0.070 s
strel>strel.isflat203051.702 s1.702 s
chunk_start2021.652 s1.472 s
images/private/bwlabel1 (MEX-file)185891.582 s1.582 s
fliptform17211.562 s0.120 s
strel>strel.getsequence166691.542 s1.542 s
ml_setimglnpixel22261.532 s0.020 s
maketform>inv_box17211.492 s1.492 s
maketform>box34421.482 s0.561 s
interp121531.412 s1.392 s
imrotate>parse_inputs17211.352 s0.320 s
tformarray>CheckResampler17211.332 s0.070 s
nanmean181741.302 s1.302 s
imrotate>getOutputBound17211.292 s0.310 s
images/private/isresampler17211.262 s0.310 s
makeresampler>GetCanonicalString34421.252 s0.180 s
tformarray>CheckDimsAndSizes17211.212 s0.280 s
images/private/tform>checkCoordinates34421.212 s0.240 s
slvblk4041.112 s0.541 s
interp2>linear1891.102 s1.102 s
bwdist>parse_inputs8080.991 s0.981 s
tformfwd17210.981 s0.060 s
tp_imtight2020.951 s0.911 s
mean121180.931 s0.931 s
images/private/imhistc (MEX-file)4040.921 s0.921 s
makeresampler>StandardKernel17210.911 s0.150 s
maketform>fwd_box17210.881 s0.881 s
tformarray>fullsizes17210.821 s0.270 s
num2str>handleNumericPrecision23240.811 s0.170 s
imrotate>useIPP17210.801 s0.020 s
maketform>affine17210.801 s0.320 s
maketform>box234420.791 s0.441 s
strel>ParseInputs31350.781 s0.581 s
ml_objinimg2D121150.761 s0.761 s
bwboundaries>FindObjectBoundaries17210.741 s0.140 s
makeresampler>FindValue17210.701 s0.130 s
strel>MakeArbitraryStrel17210.651 s0.190 s
num2str>convertUsingRecycledSprintf23240.641 s0.641 s
imagesci/private/readtif>checkIndex115500.611 s0.320 s
images/private/morphop>useIPP3x3123220.611 s0.611 s
train_nuc_shape_model10.591 s0.401 s
images/private/tform>checkTform34420.591 s0.401 s
bwperim>ScalarToArray181730.591 s0.591 s
ml_ls200.561 s0.080 s
ismember34430.561 s0.561 s
maketform>composite17210.561 s0.401 s
images/private/morphop>CheckInputImage142450.551 s0.471 s
maketform>custom17210.551 s0.250 s
maketform>assigntform86050.511 s0.511 s
images/private/bwlabel2 (MEX-file)185890.511 s0.511 s
spcol4040.501 s0.310 s
images/private/lutdilate351980.491 s0.491 s
imagesci/private/readtif>check_info115500.481 s0.481 s
linspace26260.481 s0.481 s
imagesci/private/readtif>process_region115500.471 s0.471 s
ml_majorangle2020.451 s0.150 s
polyfit2020.431 s0.130 s
images/private/istform86050.421 s0.421 s
bwboundaries>parseInputs17210.381 s0.310 s
maketform>validate_matrix17210.360 s0.180 s
maketform>isdoubleinteger68840.310 s0.310 s
strread20400.300 s0.220 s
polyfit>warnIfLargeConditionNumber2020.300 s0.010 s
filesep65460.290 s0.290 s
ippl17210.290 s0.110 s
...readtif>isPositiveFiniteIntegerScalar115500.290 s0.290 s
imclearborder>parse_inputs17210.290 s0.170 s
condest2020.290 s0.050 s
close4040.270 s0.090 s
fileparts8090.230 s0.200 s
cov>iscovflag121150.230 s0.230 s
sort_nat220.220 s0.220 s
spmak6080.220 s0.130 s
makeresampler>SampleKernel17210.210 s0.100 s
ml_initparam10190.200 s0.100 s
augknt8080.200 s0.110 s
tformarray>CheckFillArray17210.200 s0.200 s
fixadherent2020.190 s0.190 s
ml_moment22020.190 s0.190 s
...rray>IsFinitePositiveIntegerRowVector51630.190 s0.190 s
aptknt4040.190 s0.010 s
chckxywp4040.180 s0.180 s
images/private/morphop>getPadValue125240.170 s0.170 s
automesh6060.160 s0.160 s
eff_PCA10.160 s0.140 s
imhist>parse_inputs4040.160 s0.140 s
getrangefromclass4040.160 s0.060 s
cond17210.160 s0.160 s
maketform>fwd_affine17210.160 s0.080 s
maketform>isfinitedouble68840.150 s0.150 s
makeresampler>AssignResampler17210.140 s0.140 s
normest12020.130 s0.080 s
tformarray>GetBlocking17210.120 s0.120 s
bwlabeln>parse_inputs4040.110 s0.050 s
ml_wmoment4040.110 s0.110 s
makeresampler>LinearKernel17210.110 s0.110 s
chunk_finish2020.110 s0.110 s
aveknt4040.100 s0.060 s
bwunpack2020.100 s0.080 s
fnval10.100 s-0.000 s
tempdir8080.090 s0.090 s
imagesci/private/getFileFromURL14270.090 s0.090 s
spval10.090 s0.020 s
close>safegetchildren4040.090 s0.060 s
spmak>chckknt6080.090 s0.090 s
dataread (MEX-file)20400.080 s0.080 s
imagesci/private/tifftagsprocess14270.080 s0.080 s
close>request_close4040.080 s0.010 s
images/private/ipplmex (MEX-file)17210.080 s0.080 s
intline4040.080 s0.080 s
images/private/lutper4121150.080 s0.080 s
imshow2260.080 s0.040 s
pwd14430.070 s0.070 s
intmin4040.070 s0.070 s
onCleanup>onCleanup.delete2020.070 s0.030 s
images/private/bwboundariesmex (MEX-file)34420.070 s0.070 s
brk2knt8080.070 s0.070 s
sorted4040.070 s0.070 s
images/private/lutper860580.070 s0.070 s
imagesci/private/isNonEmptyString14270.060 s0.060 s
bwpack2020.060 s0.050 s
ml_setimgptspixel2260.060 s0.050 s
opaque.char2060.050 s0.050 s
ml_findmainobj>create@(x)size(x,1)4040.050 s0.050 s
normest1>normapp6060.050 s0.030 s
im2double4040.040 s0.030 s
closereq10.040 s0.010 s
condest>@()warning(warns)2020.040 s0.040 s
iptgetpref20.040 s0.030 s
tformarray>CheckInputArray17210.040 s0.040 s
cart2pol17210.040 s0.040 s
bkbrk4040.040 s0.040 s
sp2pp10.040 s0.000 s
spbrk4110.040 s0.040 s
ml_estpdf40.030 s0.020 s
ispc8170.030 s0.030 s
ls200.030 s0.000 s
ls>quoteUnixCmdArg200.030 s0.010 s
ml_dir20.030 s0.000 s
close>request_close_helper20.030 s0.020 s
condest>create@()warning(warns)2020.030 s0.030 s
images/private/conn2array17210.030 s0.030 s
message2260.030 s0.030 s
fullfile60.020 s0.020 s
cell.strcat200.020 s0.020 s
setdiff20.020 s0.020 s
xyzvchk>isvector16680.020 s0.020 s
sp2pp>sp2pp120.020 s0.000 s
ppual10.020 s0.020 s
openfig>getToken10.020 s0.010 s
openfig>cleanUp10.020 s0.000 s
openfig>@(o,e)cleanUp(o,e,filename)10.020 s0.000 s
condest>condestf6060.020 s0.020 s
maketform>condlimit17210.020 s0.020 s
double.superiorfloat21530.020 s0.020 s
fnbrk30.020 s0.010 s
ppmak30.020 s0.020 s
set_temp_result_folders10.010 s0.010 s
validatestring>checkInputs20.010 s0.010 s
java.net.Inet4Address (Java method)2020.010 s0.010 s
genvarname10.010 s0.000 s
xyzchk>isvector5670.010 s0.010 s
intmax4050.010 s0.010 s
region_seg>im2graydouble4040.010 s0.010 s
findobj70.010 s0.010 s
close>checkfigs4050.010 s0.010 s
...modemanager.uimodemanager>localDelete10.010 s0.010 s
...anager>@(obj,evd)(localDelete(hThis))10.010 s0.000 s
ml_findmainobj>@(x)size(x,1)4210.010 s0.010 s
onCleanup>onCleanup.onCleanup2020.010 s0.010 s
validatestring20.010 s0.000 s
images/private/bwunpackc (MEX-file)2020.010 s0.010 s
isFigureAvailable2260.010 s0.010 s
normfit30.010 s0.010 s
sprpp20.010 s0.010 s
ml_estcov20 s0.000 s
usejava40 s0.000 s
iofun/private/urlreadwrite40 s0.000 s
sun.net.www.protocol.http.Handler (Java method)40 s0.000 s
java.net.URL (Java method)80 s0.000 s
...mathworks.net.transport.DefaultTmwTCP (Java method)40 s0.000 s
java.io.File (Java method)200 s0.000 s
java.io.FileOutputStream (Java method)80 s0.000 s
...t.www.protocol.http.HttpURLConnection (Java method)40 s0.000 s
...ttp.HttpURLConnection$HttpInputStream (Java method)40 s0.000 s
isunix200 s0.000 s
cellstr400 s0.000 s
sortrows220 s0.000 s
img2model>setDebugParam10 s0.000 s
img2model>setVerboseParam10 s0.000 s
ml_cov10 s0.000 s
graphics/private/findobjhelper70 s0.000 s
gcbf30 s0.000 s
uitools.uimode.createuimode>localCleanUp10 s0.000 s
genvarname>isCellString20 s0.000 s
genvarname>isString10 s0.000 s
dec2hex10 s0.000 s
iskeyword10 s0.000 s
fliplr20 s0.000 s
ml_estpdf>ml_estpdf_checkvar40 s0.000 s
iptutils/private/iptprefsinfo20 s0.000 s
generateArgumentDescriptor20 s0.000 s
validatestring>checkString20 s0.000 s
images/private/bwpackc (MEX-file)2020 s0.000 s
deal20 s0.000 s
ppbrk10 s0.000 s
ppual>get_index20 s0.000 s
num2cell20 s0.000 s
cell2mat10 s0.000 s
date10 s0.000 s
isdir10 s0.000 s

Self time is the time spent in a function excluding the time spent in its child functions. Self time also includes overhead resulting from the process of profiling.