Model classes and typesΒΆ

This table lists all supported model classes and types in this version of CellOrganizer

2D/3D Model Class Model Type Depends on Produces
2D vesicle gmm nuclear_membrane & cell_membrane vesicle
2D nuclear_membrane medial_axis N/A nuclear_membrane
2D framework pca N/A cell_membrane, nuclear_membrane
2D cell_membrane ratio nuclear_membrane cell_membrane
3D vesicle gmm nuclear_membrane & cell_membrane vesicle
3D nuclear_membrane cylindrical_surface N/A nuclear_membrane
3D cell_membrane ratio nuclear_membrane cell_membrane
2D framework diffeomorphic N/A cell_membrane, nuclear_membrane
3D framework diffeomorphic N/A cell_membrane, nuclear_membrane
3D network microtubule_growth nuclear_membrane & cell_membrane microtubule
3D protein_distribution morphing N/A protein spatial distribution
3D standardized_voxels standardized_map_half-ellipsoid N/A N/A
3D csgo half-ellipsoid N/A N/A