Model classes and typesΒΆ
This table lists all supported model classes and types in this version of CellOrganizer
2D/3D | Model Class | Model Type | Depends on | Produces |
---|---|---|---|---|
2D | vesicle | gmm | nuclear_membrane & cell_membrane | vesicle |
2D | nuclear_membrane | medial_axis | N/A | nuclear_membrane |
2D | framework | pca | N/A | cell_membrane, nuclear_membrane |
2D | cell_membrane | ratio | nuclear_membrane | cell_membrane |
3D | vesicle | gmm | nuclear_membrane & cell_membrane | vesicle |
3D | nuclear_membrane | cylindrical_surface | N/A | nuclear_membrane |
3D | cell_membrane | ratio | nuclear_membrane | cell_membrane |
2D | framework | diffeomorphic | N/A | cell_membrane, nuclear_membrane |
3D | framework | diffeomorphic | N/A | cell_membrane, nuclear_membrane |
3D | network | microtubule_growth | nuclear_membrane & cell_membrane | microtubule |
3D | protein_distribution | morphing | N/A | protein spatial distribution |
3D | standardized_voxels | standardized_map_half-ellipsoid | N/A | N/A |
3D | csgo | half-ellipsoid | N/A | N/A |