Installing CellOrganizer¶
Requirements¶
- Matlab 2016b or newer
- Bioinformatics Toolbox
- Computer Vision System Toolbox
- Control System Toolbox
- Curve Fitting Toolbox
- Image Processing Toolbox
- Mapping Toolbox
- Optimization Toolbox
- Robust Control Toolbox
- Signal Processing Toolbox
- Simulink
- Simulink Design Optimization
- Statistics and Machine Learning Toolbox
- System Identification Toolbox
- Wavelet Toolbox
Downloading CellOrganizer¶
CellOrganizer for Matlab is the most flexible and powerful of the CellOrganizer deliverable, since it interfaces with Matlab which facilitates data analysis.
To download the latest CellOrganizer for Matlab distribution go to the download page. Aftwards, extract the contents of the release into a local directory of your preference.
For example,
cd ~/
wget -nc http://cellorganizer.org/downloads/v2.7/cellorganizer_v2.7.1_and_image_collection.tgz
tar -xvf cellorganizer_v2.7.1_and_image_collection.tgz
rm -fv cellorganizer_v2.7.1_and_image_collection.tgz
The commands above will download and extract to disk the contents of CellOrganizer v2.7.1.
Starting CellOrganizer¶
To start using CellOrganizer, start a Matlab session and change the directory to the location of CellOrganizer folder and run setup.m.
In the Matlab, type
>> cd( ‘/path/to/folder/cellorganizer’ );
>> setup();
If you were successful you should see a message like
>> setup
Checking for new stable version... Version is up to date.
You are now ready to use CellOrganizer for Matlab.