Required Fields
There are no required fields.
Default Fields
Field |
Type |
Allowed Values |
Default Value |
targetDirectory |
string |
any string |
'./' |
prefix |
string |
any string |
'demo' |
numberOfSynthesizedImages |
int |
any int >= 1 |
1 |
compression |
string |
('none','lzw','packbits') |
'none' |
protein.cytonuclearflag |
string |
('cyto','nuc','all') |
'cyto' |
verbose |
boolean |
(True,False) |
True |
debug |
boolean |
(True,False) |
False |
microscope |
string |
('none','lzw') |
'none' |
synthesis |
string |
('nuclear','framework','all') |
'all' |
protein.cytonuclearflag |
string |
('cyto','nucleus','all') |
'all' |
sampling.method |
string |
('disc','sampled') |
'disc' |
savePDF |
boolean |
(True,False) |
False |
spherical_cell |
boolean |
(True,False) |
False |
synthesis.diffeomorhic.maximum_iterations |
int |
any int |
100 |
randomwalk |
boolean |
(True,False) |
False |
framefolder |
string |
any string |
[] |
walksteps |
int |
any int |
1 |
overlapsubsize |
double |
any non-neg double |
0.3 |
overlapthresh |
double |
any non-neg double |
2 |
rendAtStd |
double |
any non-neg double |
2 |
Optional Fields
Field |
Type |
Allowed Values |
Default Value |
sampling.method.density |
int |
any int |
[] |
resolution.cell |
1x3 double array |
any 1x3 double array |
[] |
resolution.objects |
1x3 double array |
any 1x3 double array |
[] |
instance.cell |
2D/3D binary image |
binary valued image |
[] |
instance.nucleus |
2D/3D binary image |
binary valued image |
[] |
tempdir |
string |
any string |
'./temp' |
walk_type |
string |
(‘willmore’,’brownian’,’density’) |
True |
output.tifimages |
boolean |
(True,False) |
[] |
output.indexedimage |
boolean |
(True,False) |
[] |
output.SBML |
boolean |
(True,False) |
[] |
output.blenderfile |
boolean |
(True,False) |
[] |
output.blender.downsample |
double |
any non-negative double |
[] |