Dr. Robert F. Murphy Short CV (as html) Long CV (as PDF) Biography (as html) Publications

• Gary Wilkins, Biological Sciences Ph.D. Program

• Shiqiu Yu, Automated Science M.S. Program

• Ted Zhang

• Jose Lugo-Martinez (2017-2021)
  • Assistant Professor, University of Puerto Rico, Rio Pedras, 2021-2022
  • Assistant Professor, Computational Biology Department, Carnegie Mellon University, 2022-
• Maja Temerinac-Ott (University of Freiburg) (2013-2016)
  • Postdoctoral Fellow, University of Strasbourg, 2016-
• Taraz Buck (2013)
• Seung-Il Huh (2013)
  • Google Laboratories, Pittsburgh, 2014-
• Baek-Hwan Cho (2009-2012; supported by Korea Research Foundation)
  • Assistant Professor, Samsung Medical Center, Seoul, 2017-
  • Research Staff, Samsung Advanced Institute of Technology, 2012-2016
• Arvind Rao (Lane Fellow, 2008-2011)
  • Assistant Professor, Department of Bioinformatics and Computational Biology, M.D. Anderson Cancer Center, 2011-
• Russell Wilson
  • Chief Science Officer, Autoimmune Technologies, LLC
• Peter Kulakosky
  • Autoimmune Technologies, LLC

• Huangqingbo (Paul) Sun, M.S., Automated Science, 2021; Ph.D., Computational Biology (2024)
  • Postdoctoral Fellow, Stanford University, 2024-
• Haoran Chen, Ph.D., Computational Biology (2023)
  • Senior Bioinformatics Research Scientist, St. Jude Children's Research Hospital, 2023-
• Justin Hoffman, M.S., Automated Science (2022)
  • Senior Machine Learning Engineer, Lockheed Martin, 2022-
• Aparna Kumar, Ph.D., Computational Biology (2021)
  • Data Scientist, Dow Jones, 2015-
• Xiongtao Ruan, Ph.D., Computational Biology (2019)
  • Postdoctoral Fellow, University of California, Berkeley, 2019-
• Sun Uk Kim, M.S., Biomedical Engineering (2018)
  • Software Engineer, LINE Plus Corp
• Jingyi Wang, M.S., Biomedical Engineering (2017)
  • Data Scientist, KPMG Lighthouse
• Timothy Majarian, M.S., Computational Biology (2017)
  • Computational Associate, Broad Institute of MIT and Harvard
• Gregory R. Johnson, Ph.D., Computational Biology (2016)
  • Scientist/Machine Learning Specialist, Allen Institute for Cell Science, 2016-
• Devin Sullivan, Ph.D., Computational Biology (2015)
  • Postdoctoral Fellow, Science for Life Labs, KTH Royal Institute of Technology, Stockholm, Sweden, 2015-
• Taraz Buck, Ph.D., Computational Biology (2013)
  • Postdoctoral Fellow, Ray and Stephanie Lane Center for Computational Biology, 2013-2014
• Armaghan Naik, Ph.D., Computational Biology (2013)
  • Director of Innovation, Sanofi Pasteur, 2016-
  • Lane Fellow, Ray and Stephanie Lane Center for Computational Biology and Computational Biology Department, 2013-2016
• Joshua D. Kangas, Ph.D., Computational Biology (2013)
  • Assistant Teaching Professor, Computational Biology Department, Carnegie Mellon University, 2018-
  • Chief Executive Officer, Quantitative Medicine, LLC, 2017-
  • Cofounder and Chief Science Officer, Quantitative Medicine, LLC, 2012-2017
• Jieyue Li, Ph.D., Biomedical Enginnering (2012)
  • Machine Learning Expert, ZestFinance, Los Angeles, CA
• Aabid Shariff, Ph.D., Computational Biology (2012) (Jointly advised with Gustavo Rohde)
  • Director of Data Science, Pairwise Plants, 2018-
  • Senior Scientist, Image Analysis and Computational Biology, GrassRoots Biotechnology, Durham, NC, 2012-2018
• Luis Pedro Coelho, Ph.D., Computational Biology (2011)
  • Group Leader, Queensland University of Technology, 2023-
  • Assistant Professor, Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, 2018-2023
  • Postdoctoral fellow, Peer Bork group, European Molecular Biology Laboratory, Heidelberg, Germany, 2013-2018
  • Postdoctoral fellow, Musa M. Mhlanga group, Council for Scientific and Industrial Research, South Africa and University of Lisbon, Portugal, 2011-2013
• Tao Peng, Ph.D., Biomedical Engineering (2011)
  • Software Engineer, Bing Indexing and Knowledge team, Microsoft, Bellevue, Washington, 2011-
• Tien-ho (Henry) Lin, Ph.D., Language Technologies (2011) (Jointly advised with Ziv Bar-Joseph)
  • Postdoctoral Fellow, eScience group, Microsoft Research, Los Angeles, California, 2011-
• Justin Newberg, Ph.D., Biomedical Engineering (2009)
  • Foundation Medicine, 2018-
  • Applied Research Scientist, Moffitt Cancer Center, 2017-2018
  • Postdoctoral Fellow, Neil Copeland and Nancy Jenkins Lab, Methodist Hospital Research Institute, 2012-2016
  • Postdoctoral Fellow, Michael Mancini group, Baylor College of Medicine, 2009-2012
• Ivan Cao-Berg, M.S., Computational Biology (2009)
  • Senior Research Programmer, Computational Biology Department, 2012-
  • Research Programmer, Ray & Stephanie Lane Center for Computational Biology, 2010-2012
• Elvira (Garcia Osuna) Osuna Highley, Ph.D., Biomedical Engineering (2007)
  • Senior Technical Evangelist, Mathworks, Inc., 2016-
  • Postdoctoral Fellow, Phil Campbell Group, Carnegie Mellon University, 2009-2011
  • Special Lecturer, Ray & Stephanie Lane Center for Computational Biology, 2007-2009
• Shann-Ching Chen, Ph.D., Biomedical Engineering (2007)
  • Senior Oncology Bioinformatician, Natera, 2016-
  • Scientific Program Director, University of California, San Francisco, 2015-2016
  • Bioinformatics Staff Scientist, Life Technologies, Inc., 2013-2015
  • Bioinformatics Associate Research Scientist, St. Jude Children's Research Hospital, 2009-2013
  • Postdoctoral Fellow, Gaudenz Danuser group, Scripps Research Institute, 2007-2009
• Ting Zhao, Ph.D., Biomedical Engineering (2007)
  • Senior Software Engineer, Howard Hughes Medical Institute, 2012-
  • Assistant Professor, Qiushi Academy for Advanced Studies, Zhejiang University, 2010-2012
  • Postdoctoral Fellow, Eugene W. Myers group, Janelia Farm Research Campus, Howard Hughes Medical Institute, 2007-2010
• Yanhua Hu, Ph.D., Biological Sciences (2007)
  • Senior Research Investigator, Bristol-Myers Squibb, 2016-
  • Research Investigator, Bristol-Myers Squibb, 2007-2016
• Juchang Hua, Ph.D., Biological Sciences (2007), M.S. Computational and Statistical Learning (2006)
  • Vice President, Morgan Stanley, 2013-
  • Associate then Vice President, Goldman Sachs Group, Inc., 2007-2013
• Amol Shanbhag, M.S., Biomedical Engineering (2006)
  Microsoft
• Xiang Chen, Ph.D., Biological Sciences (2005), M.S. Computational and Statistical Learning (2005)
  • Bioinformatics Research Scientist, St. Jude Children's Research Hospital, 2010-
  • Postdoctoral fellow, Yale Collaborative Center for Statistics in Science, 2005-2009
• Kai Huang, Ph.D., Biological Sciences (2004), M.S. Computational and Statistical Learning (2003)
  • Associate, Fixed Income and Derivatives Department, Credit Suisse First Boston, New York
• Meel Velliste, Ph.D., Biomedical Engineering (2002)
  • Vice President of Engineering, Fivetran, 2012-
  • Research Assistant Professor, University of Pittsburgh, 2006-2012
  • Postdoctoral fellow, Schwartz lab, Department of Neurobiology, University of Pittsburgh, 2002-2006
• Edward J.S. Roques, M.S., Computational Biology (2001)
  • Software Engineer, Atto Bioscience
• E. John Meharra, Ph.D., Biological Sciences (2001, posthumous)
• Michael V. Boland, Ph.D., Biomedical Engineering (1999)
  • Assistant Professor, Wilmer Ophthalmological Institute, Johns Hopkins University
  • Resident, Department of Ophthalmology and Visual Sciences, University of Iowa, 2001-2005
  • MD/PhD Student - University of Pittsburgh School of Medicine and Carnegie Mellon University
• Sheree Rybak, Ph.D., Biological Sciences (1997)
  • Attorney, Klarquist Sparkman Campbell Leigh & Whinston, LLP, Portland, OR
  • Technical Consultant, Klarquist Sparkman Campbell Leigh & Whinston, LLP, Portland, OR
  • Postdoctoral Fellow, Gary Thomas, Vollum Institute, Oregon Health Sciences University
• Sandra Brockman, Ph.D., Biological Sciences (1994)
  • Associate, Proskauer Rose LLP, Boston, MA, 2005-
  • Associate, Hamilton, Brook, Smith & Reynolds, P.C., Boston, MA, 2003-2005
  • Technical Specialist, Hamilton, Brook, Smith & Reynolds, P.C., Boston, MA, 1996-2003
  • Postdoctoral Fellow, Harvey Lodish, Whitehead Institute, MIT
• David Sipe, Ph.D., Biological Sciences (1990)
  • Researcher, Minden lab, Carnegie Mellon University
  • Senior Scientist, Gull Labs, Inc., Salt Lake City, UT
• Cynthia Corley (Cain) Mastick, Ph.D., Biological Sciences (1990)
  • Associate Professor, University of Nevada, Reno, 2008-
  • Assistant Professor, University of Nevada, Reno, 2003-2008
  • Postdoctoral Fellow, Alan Saltiel, Parke-Davis Pharmaceutical Research Division
  • Postdoctoral Fellow, Gus Lienhard, Dartmouth University
• Mario Roederer, Ph.D., Biological Sciences (1988)
  • Director, Flow Cytometry Core Facility, Vaccine Reserch Center, NIAID, NIH, 2000-
  • Postdoctoral Fellow, then Senior Postdoctoral Fellow, then Research Associate, Herzenberg Laboratory, Stanford University School of Medicine, Palo Alto, CA, 1988-2000

• Johannes Schmid, February 1993-March 1993, Dept. General & Experimental Pathology, University Vienna (Dr. Renate Fuchs)
  • Ao. Univ. Prof. DI., Dept. Vascular Biology & Thrombosis Research, University of Vienna
• Daniela Schober, Dept. General & Experimental Pathology, University Vienna (Dr. Renate Fuchs)
• Ying Li, State Key Laboratory of Information Engineering in Surveying, Mapping and Remote Sensing, Wuhan University, Wuhan, China

Last Updated: 16 Apr 2024

Copyright © 1996-2019 by the Murphy Lab, Computational Biology Department at Carnegie Mellon University