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Murphy Lab - Software - Bioinformatics 2012

The software and intermediate results used for the following paper can be downloaded below:

J. Li, L. Xiong, J. Schneider and R. F. Murphy (2012) Protein Subcellular Location Pattern Classification in Cellular Images Using Latent Discriminative Models. Proceedings of ISMB 2012.

You can download this helper script for Linux that will download and extract the source code and the intermediate results.

The data and code are contained in .tgz files (tar archives created with the -z option):

File	Link
Source Code (19 MB)	Link
Intermediate Results These are the results of image preprocessing and feature calculation, and are broken into separate files to avoid the 2 GB limit on some systems. Each file is approximately 1.9 GB.	Link Link Link Link Link Link Link Link

System requirements

MATLAB

This code has been tested in Matlab 2011a (CentOS).

Last Updated: 24 Mar 2015