These files can be used to regenerate the tables and figures in the paper.
You can use the helper script getintermediatedata.sh to download, concatenate and extract all of the intermediate data.
To recreate the results from the article (i.e. the figures and tables) from the primary data,
Download and expand the source code to the desired directory.
wget -nc http://murphylab.web.cmu.edu/software/2015_BMC_bioinformatics/BMC_active_source_code.tgz tar -xzf BMC_active_source_code.tgz Go into the code directory and run the code
cd code matlab >> run
This will download the primary data and run all analyses. It may take several days on a single compute node.
Recreating results from intermediate results
To recreate the results from the article (i.e. the figures and tables) from the intermediate results,
Download and expand the source code to the desired directory.
wget -nc http://murphylab.web.cmu.edu/software/2015_BMC_bioinformatics/BMC_active_source_code.tgz tar -xzf BMC_active_source_code.tgz Go into the code directory and run the code
cd code matlab >> run('intermediate_results')
This will download the primary data and the intermediate results, and then generate figures and tables from them.
System requirements
MATLAB
This package has been tested using Matlab 2014a in CentOS.