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Murphy Lab - Software - 2019 - PC12 Differentiation

The software and data used for the following paper can be downloaded below:

Xiongtao Ruan, Gregory R. Johnson, Iris Bierschenk, Roland Nitschke, Melanie Boerries, Hauke Busch and Robert F. Murphy (2019) Image-derived models of cell organization changes during differentiation and drug treatments. Molecular Biology of the Cell 31:655-666. [DOI]

Source Code

PC12_code.tgz (386Mb)

Input Images

PC12_images.tgz (21Gb) These are the original images in Zeiss format. They are described here. They are also available in OME-TIFF format from Data Dryad below.

Data Dryad (18Gb)

Intermediate Results

PC12_intermediate_results.tgz (23GB) This file contains all of the results generated from the raw images by the source code. It can be used to reproduce all of the figures and tables.

Last Updated: 14 Jul 2020